Perform VIPER — performViper • ingres

Performs VIPER analysis on a RNA-seq dataset contained by an ingres object. This function is merely a wrapper around the original VIPER function, designed to suit the ingres workflow and properly prepare the input data.

Usage

performViper(ingres.object, regulon, verbose = FALSE)

Arguments

ingres.object: An ingres object.
regulon: Object of class regulon or list of objects of class regulon for metaVIPER analysis
verbose: Logical, whether progression messages should be printed in the terminal

Value

An ingres object with the result of the VIPER inference in the viper slot

Examples

# Subset regulon to speed up example run
regulon <- aracne.networks::regulonblca[1:100]
ing <- createExampleIngresObject()
performViper(ing, regulon)
#> An ingres object
#> --------------------
#> 16314 features across 90 samples
#> 9 clusters
#> Its Boolean network has 30 nodes
#> Viper performed